PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088101.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26804.7 Da    PI: 9.3735
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088101.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.53.1e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g++KK +ELS+LC+++ + i++s+
  XP_011088101.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDSCAIVYSP 50
                    89**************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.708149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-23185IPR002100Transcription factor, MADS-box
CDDcd002662.21E-21285No hitNo description
PRINTSPR004046.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTRKKVKMAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDSCAIVYSP YDSHPEVWPD  60
GRGAHRVLAQ FKRMPEMEQS KKMVNQESFI RHRITKAADQ LKKLHKDNRE KEITHLMYQC  120
LTGKELQGLG VAELNDMGWL VDQNLKEIYK RIEGLKKAAG ERDGVEEKPA AVVDGSMQRA  180
ALQQQWFTDE WMGNINPSDN EQGVGGSFAH GAGDEIIMQF NDGSNHAAAM WSNVFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKMAFITNDSARKATFKKRK
22125KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088101.11e-180PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-60AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A022PV321e-110A0A022PV32_ERYGU; Uncharacterized protein
STRINGSolyc01g102260.2.13e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-61AGAMOUS-like 80